Crop Yield Assessment from Photos with Python and Scikit-Learn

Evaluation of crop yield can be tedious because sampling methods requires the actual counting of fruits for a whole tree or canopy area. If we want to optimize this time demanding task we can use new and open source machine learning algorithms available. We have selected Scikit-Learn for this tutorial, a machine learning library in Python for it ease to use, the available documentation and the sort of available tools. 

The tutorial covers the whole procedure of image representation, point of interest selection, template matching, cluster analysis and fruit counting. Python scripting was done in Jupyter Notebook, it is interactive and allows the user to add more points of interest or remove inaccurate points.

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How to convert GTIFF to STL for Topography Representation in OpenFOAM Models

For OpenFOAM modelers the representation of topography can be painful due to the unstabilities and complexities of the Bezier Surfaces in Salome Platform. It is more stable to create the mesh by importing a full textured surface on a format file compatible with Salome. This tutorial show the process to create a STL file from a GeoTiff(.tif) file by scripts in Python. We have used the OSGeo4W Shell that comes with the normal QGIS instalation because it comes with the gdal library already installed.

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How To Create Line From Points in QGIS with PyQGIS and Pandas - Tutorial

Python scripting allows us to enhance the data management and spatial analysis in QGIS. Most times, spatial data comes from a variety of data providers in a sort of formats and data types that we have to be adapted to the GIS standard. Big data and continuos monitoring create large datasets that have to indexed, sorted and manipulated in a effective way.

QGIS has a Python console and the capability to install external Python packages that run on QGIS session. This time we have installed Pandas in QGIS to handle the data from a sensing device made on a Raspberry Pi 3 and then we have defined the path as a succession of points with PyQGIS scripting.

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Spatio-Temporal Hurricane Tracking in the Gulf of Mexico with QGIS and PyQGIS - Tutorial

This tutorial show a mixed procedure with native QGIS tools and PyQGIS commands for the data representation, styling and plotting with spatio-temporal criteria with the TimeManager plugin. Data for this tutorial was downloaded from the National Hurricane Center's Tropical Cyclone Reports that contains information as six-hourly positions and intensities. You can access the whole hurricane database o

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How to add multiple Vector Layers and group them in QGIS with PyQGIS - Tutorial

QGIS is a great software for the processing/analysis of spatial data, Python is a clear, powerful programming lenguaje; together they can enhance the spatial analysis to solve more complex or more dedicated problems in less time. PyQGIS is the Python environment inside QGIS with a set of QGIS libraries plus the Python tools with the potential of running other powerful libraries as Pandas, Numpy or Scikit-learn. 

This tutorial shows the whole procedure to upload multiple files from a certain pattern and group them on the Layer Panel using PyQGIS commands.

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How to Upload a Shapefile in QGIS with PyQGIS - Tutorial

QGIS is a great software for the processing/analysis of spatial data, Python is a clear, powerful programming lenguaje; together they can enhance the spatial analysis to solve more complex or more dedicated problems in less time. PyQGIS is the Python environment inside QGIS with a set of QGIS libraries plus the Python tools with the potential of running other powerful libraries as Pandas, Numpy or Scikit-learn. This tutorial show the basic procedure to upload a shapefile in QGIS with PyQGIS.

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Tree / Crop Counting and Classification with Python and Scikit-Image - Tutorial

Lately there has been a wide source of spatial photogrametry available for agriculture. Available submetric images can be found in Google Earth, and drone images can increase the ortophoto resolution to the order of centimeters. Most of this data gives us a new perspective of the spatial distribution and stage of the crops, however a real spatial analysis of crop metrics have not been widely performed due to limitations on the images and software involved. 

We tried to make this tutorial with the popular library OpenCV, however the installation process was tedious in Windows. Then we shifted to Scikit-Image, a image processing library in Python that comes already installed on the Anaconda software. The process for image analysis required intermediate Python and GIS skills, but most important a strong criteria of the algorithm inputs, options and results.

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How to join tables in QGIS - Tutorial

QGIS is a powerful open source software for spatial analysis and management of spatial data. User experience with QGIS is great and most users find QGIS easier to use than other free and commercial GIS software. This time we will show how simple is the process to join tables in QGIS. Spatial data of sanitary quality of beaches in Lima was used to show the join table process.

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Example of Zone Budget Package in MODFLOW with Model Muse

MODFLOW is the code developed by the USGS for the simulation of groundwater flow in steady and transient flow conditions. MODFLOW can represent a wide variety of physical process related to the groundwater flow regime as recharge, evapotranspiration, wells, among others. Latest development in MODFLOW allow the simulation of flow and transport in the unsaturated flow zone with the UZF and MT3D packages. From the beginning of the MODFLOW development the water balance on the groundwater models was a strong part of the modeling process with high accuracy in between the balance of water going in and out of the system. On any groundwater flow model build on MODFLOW there absolutely control over the water coming from the specified boundary conditions and the discrepancies are minimal.

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Tutorial: Wave Barrier Design with OpenFOAM and Salome

Coastal structures are subject to tidal and wave related boundary conditions. The design of a wave barrier have to assess the water levels on the inner bay from the impact of a wave and the maximum wave height on the outside part of the structure. This evaluation can be done by the use of dynamic simulations that take into account sea floor geometry, wave barrier height, position and interaction from the water channel and so on. OpenFOAM is an open source software for the simulation of flow in steady and transient states; the software allows us the simulation of the wave interaction with the coastal structure. The tutorial deals with the main parts of mesh construction in Salome and model set up and simulation in OpenFOAM.

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Tutorial: Determination of Glaciers and Lakes from Sentinel 2 Images with QGIS and SCP Plugin

Any object on the earth has a "signature" on a different bands or ranges on the visible and invisible spectrum. Base on the values and trends on this "spectral signature" one can classify different types of land cover as lakes, soils, wetlands, exposed rock and glaciers from many free and available multispectral satellite images as Sentinel 2, Aster, MODIS, and Landsat. QGIS is a very powerful open geographical information system software and its plugin Semiautomatic Classification Plugin gives QGIS many capabilities for the download, preprocess, classification and analysis of satellite imagery without using another desktop software. This tutorial deals with the whole procedure for the supervised classification of lakes and glaciers on a clipped Sentinel 2 image and its vectorization as polygons.

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Tutorial: Direct Landsat Imagery Dowload in QGIS with SCP Plugin

Based on the review from our followers, we have noticed that the download procedure to download images from the NASA and USGS web servers had changed. It is not clear the current method to download the selected files, even if you have your username and password set up correctly. Luckly there is an alternative way to download those files with QGIS and the Semiautomatic Classification Plugin (SCP). This tutorial covers the whole procedure to sign up, select, previsualize and download a Landsat 8 in QGIS with the SCP Plugin.

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Tutorial: Intake Channel Design with OpenFOAM and Salome

The design of hydraulic structures need the comprehension of water and structure interaction in terms of level, speed, sediment transport, among others. It is important for the hydraulic structure design to take into account the extreme events of flow, pressure and speed, therefore the computational fluid dynamics (CFD) modeling becomes essential in the design stage. OpenFOAM is an open source software for the simulation of flow in steady and transient states; this software allows us the simulation of the hydraulic response from an specific requirement in laminar and turbulent flow conditions, flow velocity calculation, and determination of static and dynamic pressures.

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Tutorial: Water Surplus Evaluation at Basin Scale with QGIS and Remote Sensing Data

The current availability of strong open source GIS software together with remote sensing data and specific data products as high resolution precipitation and evapotranspiration makes possible the assessment at global scale on short processing time of certain parts of the water cycle. Water surplus is the difference in between precipitation and actual evapotranspiration, that can be translated to the difference in between IMERG imagery (precipitation) and MOD16 imagery (actual evapotranspiration). This raster algebra calculation could be implemented in open source software as QGIS with a set of specific procedures as reprojections, temporary files and raster calculators. This tutorial deal with the water surplus calculation for a andean basin for year 2015.

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Tutorial: Area of Study AsterDEM Download and Basin - Stream Delineation in QGIS

QGIS is a open source software for spatial analysis and data representation. There are many tools from QGIS for the hydrological/hydrogeological evaluation and modeling. This time we have made a tutorial with the whole procedure of the download process for a AsterDEM only on the extension of an area of study. The DEM was later reprojected on QGIS and processed to get the channel network and drainage basins. The tutorial has the purpose to show how simple is the process of working with QGIS and Processing.

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How to insert a Geological Fracture on a Hydrogeological Model with MODFLOW and Model Muse

Model Muse is a software for the pre and post data processing of hydrogeological 3D model in MODFLOW. Both Model Muse and MODFLOW are developed by the USGS (usgs.gov). Model Muse is designed to work with objects and datasets, a powerful model construction methodology that allows the quick setup of boundary conditions, a simple way of progressive refinement and interesting features as inserting geological fractures on the numerical model.

This tutorial show the whole procedure for the conceptualization of several fractures based on some known fracture information as a point on the fractures, the azimuth and elevation. The tutorial deals with the theorethical determination of the fracture plane equation, the construction of a dataset with the desired equation plus the implementation of object that represents the fracture with the relevant hydrogeological features.

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Tutorial Infiltration Gallery for Water Supply Modeling with MODFLOW and Model Muse

Tutorial for the simulation of filtration galleries close to a river. Modeling done with MODFLOW, Model Muse and QGIS.

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Tutorial of a Cross Seccion of Water Quality with MODFLOW, MT3DMS y QGIS

Groundwater flow modeling depends on GIS data, and its output is compatible with a sort of GIS tools. In order to do analysis or representation from contaminant transport modeling it is needed a sort of commands, formats, tools and plugins from a stack of programs as ModelMuse and QGIS.

This tutorial is not only a example of water quality representation, it is as well a discussión on the main parts of modeling construction and simulation.

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How to insert a Geological Contact in MODFLOW with MODEL MUSE

Model Muse and QGIS makes possible to deal with geological data for the groundwater flow model cocntstruction. A diverse group of tools are required to process and insert geological features as contacts or faults. This tutorial show the whole procedure from the ground up to build the model geometry and insert a geological contact as the interfase within two layers.

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Tutorial to Georeference Google Searches with Python and QGIS

To carry out a series of studies and investigations we have to know both name and location of certain places. This may be available through some web pages, however the use of data is limited and advance geoprocessing tools on softwares as QGIS can not be used. There are several services or APIs that can bring you the spatial location of Google searches. In this tutorial we will use the Google Maps API for the location of Hospitals in a radius of 5 kilometers from a point in Miraflores, Lima. Only open source software tools have been used for this tutorial.

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